IN SILICO ANALYSIS OF THE CELL REGENERATION PROCESS THROUGH PIWI/PIRNA INTERACTION IN MUS MUSCULUS

Authors

DOI:

https://doi.org/10.47820/recima21.v4i11.4302

Keywords:

Systems Biology, PIWI/piRNA interaction, Cell regeneration

Abstract

Cell and tissue regeneration, much discussed in various areas of medicine and biology, still has gaps in its processes and functioning. In the last decade, the role of epigenetics in this function has been elucidated, with emphasis on non-coding RNAs, including piRNAs (PIWI-interacting RNAs), previously known for their role in germ cells and in controlling transposable elements. Recent studies have demonstrated piRNA functions in somatic tissue cells, such as the nervous system, and research in small rodents, especially Mus musculus, has indicated an important link between the expression of this pathway and the correct functioning of the regeneration process. As it is a relevant challenge for regenerative medicine to understand these processes, through the robust studies described here and using Bioinformatics tools, protein-protein interaction networks (PPIN) were built to identify target proteins for therapeutic treatments based on the functioning of the PIWI/piRNA gene pathway in Mus musculus. By analyzing these networks, we were able to identify relevant proteins, as well as their interactions, for the regenerative process in mammals and, with these results, in the future we will be able to develop in vivo tests based on the data obtained in silico, thus saving time and financial investment.

Downloads

Download data is not yet available.

Author Biographies

Isabele Pagani Pavan

Universidade Federal do Espírito Santo - Aluna de Iniciação Científica - Licenciada em Ciências Biológicas e bacharelanda em Ciências Biológicas.

Irís Moreira da Siva

Universidade Federal do Espírito Santo.

Matheus Correia Casotti

Universidade Federal do Espírito Santo.

Luana Santos Louro

Emescam - Escola Superior de Ciências da Santa Casa de Misericórdia de Vitória.

Thomas Erik Santos Louro

Emescam - Escola Superior de Ciências da Santa Casa de Misericórdia de Vitória.

Elizeu Fagundes de Carvalho

Universidade Federal do Rio de Janeiro.

Debora Dummer Meira

Universidade Federal do Espírito Santo.

Iuri Drumond Louro

Universidade Federal do Espírito Santo.

References

CASOTTI, Matheus C.; MEIRA, Debora D. Construindo redes de interação proteína-

proteína por curadoria manual. Bioinfo, 2021.

COLTRI, Patricia Pereira. Caracterização de proteínas do spliceossomo e seu papel na

regulação do splicing e alterações celulares. 2021.

EUROPEAN BIOINFORMATICS INSTITUTE - QuickGO - Definition (GO:0035770

GONUTS page). Disponível em: https://www.ebi.ac.uk/QuickGO/term/GO:0035770. Acesso em 8

de setembro de 2023.

GRILLARI, Johannes; GRILLARI-VOGLAUER, Regina. Novel modulators of senescence,

aging, and longevity: Small non-coding RNAs enter the stage. Experimental gerontology, v. 45, n.

, p. 302-311, 2010.

KASHIMA, Makoto; AGATA, Kiyokazu; SHIBATA, Norito. What is the role of PIWI family

proteins in adult pluripotent stem cells? Insights from asexually reproducing animals, planarians.

Development, Growth & Differentiation, v. 62, n. 6, p. 407-422, 2020.

KIM, K. W. PIWI Proteins and piRNAs in the Nervous System. Mol. Cells, Seoul, v. 42, p.

-835, 2019.

LI, Danyan; TAYLOR, David H.; VAN WOLFSWINKEL, Josien C. PIWI-mediated control of

tissue-specific transposons is essential for somatic cell differentiation. Cell reports, v. 37, n. 1,

NAQVI, Afsar Raza et al. The fascinating world of RNA interference. International journal

of biological sciences, v. 5, n. 2, p. 97, 2009.

OW, M. C.; HALL, S. E. piRNAs and endo-siRNAs: Small molecules with large roles in the

nervous system. Neurochem Int., Syracuse, NY, v. 148, 2021.

OZATA, D. M et al. PIWI-interacting RNAs: small RNAs with big functions, Nature

Reviews, Genetics, Londres, v. 20, p. 89-106, 2019.

RAMAT, A.; SIMONELIG, M. Functions of PIWI Proteins in Gene Regulation: New Arrows

Added to the piRNA. Quiver, Trends Genet, Cambridge, v. 37(2), p. 188-200, 2021.

ROJAS-RÍOS, Patricia; SIMONELIG, Martine. piRNAs and PIWI proteins: regulators of

gene expression in development and stem cells. Development, v. 145, n. 17, p. dev161786, 2018.

ROSS, R. J.; WEINER, M. M.; LIN, H. Proteínas PIWI e RNAs que interagem com PIWI no

soma. Nature, Londres, v. 505, p. 353–359, 2014.

SATO, Kaoru; TAKAYAMA, Ken-ichi; INOUE, Satoshi. Role of piRNA biogenesis and its

neuronal function in the development of neurodegenerative diseases. Frontiers in Aging

Neuroscience, v. 15, p. 1157818, 2023.

TAVERNA, Simona; MASUCCI, Anna; CAMMARATA, Giuseppe. PIWI-RNAs Small

Noncoding RNAs with Smart Functions: Potential Theranostic Applications in Cancer. Cancers, v.

, n. 15, p. 3912, 2023.

TYCZEWSKA, Agata et al. The emerging roles of tRNAs and tRNA-derived fragments

during aging: Lessons from studies on model organisms. Ageing Research Reviews, p. 101863,

UNIPROT. UniProtKB: P07901 · HS90A_MOUSE. Disponível em:

https://www.uniprot.org/uniprotkb/P07901/entry. Acesso em: 8 de setembro de 2023.

UNIPROT. UniProtKB: Q9Z204 · HS90A_MOUSE. Disponível em:

https://www.uniprot.org/uniprotkb/Q9Z204/entry. Acesso em: 8 de setembro de 2023.

UNIPROT. UniProtKB: Q9R0Q7 · TEBP_MOUSE. Disponível em:

https://www.uniprot.org/uniprotkb/Q9R0Q7/entry. Acesso em: 8 de setembro de 2023.

UNIPROT. UniProtKB: Q14DK4 · GPAT2_MOUSE. Disponível em:

https://www.uniprot.org/uniprotkb/Q14DK4/entry. Acesso em: 8 de setembro de 2023.

WAKISAKA, K. T., IMAI, Y. The dawn of piRNA research in various neuronal disorders,

Frontiers In Bioscience, Landmark, Kyoto, v. 24, p. 1440-1451, 2019.

WEI, J.-W. et al. RNAs não codificantes como reguladores em epigenética (revisão).

Oncology Reports, Londres, v. 37(1), p. 3-9, 2017.

XU, C.; SUN, S. Expression of Piwi Genes during the Regeneration of Lineus sanguineus

(Nemertea, Pilidiophora, Heteronemertea). GENES, Basel, v. 11 (12), 2020.

Published

01/11/2023

How to Cite

Pavan, I. P., da Siva, I. M., Casotti, M. C., Louro, L. S., Louro, T. E. S., de Carvalho, E. F., … Louro, I. D. (2023). IN SILICO ANALYSIS OF THE CELL REGENERATION PROCESS THROUGH PIWI/PIRNA INTERACTION IN MUS MUSCULUS. RECIMA21 - Revista Científica Multidisciplinar - ISSN 2675-6218, 4(11), e4114302. https://doi.org/10.47820/recima21.v4i11.4302